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Reconfigure MySQL Cluster Database

This guide will show you how to use KubeDB Enterprise operator to reconfigure a MySQL Cluster.

Before You Begin

  • At first, you need to have a Kubernetes cluster, and the kubectl command-line tool must be configured to communicate with your cluster.

  • Install KubeDB Community and Enterprise operator in your cluster following the steps here.

  • You should be familiar with the following KubeDB concepts:

  • MySQL

  • MySQL Cluster

  • MYSQLOpsRequest

  • Reconfigure Overview

To keep everything isolated, we are going to use a separate namespace called demo throughout this tutorial.

$ kubectl create ns demo
namespace/demo created

Now, we are going to deploy a MySQL Cluster using a supported version by KubeDB operator. Then we are going to apply MySQLOpsRequest to reconfigure its configuration.

Prepare MySQL Cluster

Now, we are going to deploy a MySQL Cluster database with version 8.0.31.

Deploy MySQL

At first, we will create my-config.cnf file containing required configuration settings.

$ cat my-config.cnf 
[mysqld]
max_connections = 200
read_buffer_size = 1048576

Here, max_connections is set to 200, whereas the default value is 151. Likewise, read_buffer_size has the deafult value 131072.

Now, we will create a secret with this configuration file.

$ kubectl create secret generic -n demo my-configuration --from-file=./my-config.cnf
secret/my-configuration created

In this section, we are going to create a MySQL object specifying spec.configSecret field to apply this custom configuration. Below is the YAML of the MySQL CR that we are going to create,

apiVersion: kubedb.com/v1alpha2
kind: MySQL
metadata:
  name: sample-mysql
  namespace: demo
spec:
  version: "8.0.31"
  topology:
    mode: GroupReplication
  replicas: 3
  configSecret:
    name: my-configuration
  storageType: Durable
  storage:
    storageClassName: "standard"
    accessModes:
      - ReadWriteOnce
    resources:
      requests:
        storage: 1Gi
  terminationPolicy: WipeOut

Let’s create the MySQL CR we have shown above,

$ kubectl create -f https://github.com/kubedb/docs/raw/v2023.02.28/docs/guides/mysql/reconfigure/reconfigure-steps/yamls/group-replication.yaml
mysql.kubedb.com/sample-mysql created
apiVersion: kubedb.com/v1alpha2
kind: MySQL
metadata:
  name: sample-mysql
  namespace: demo
spec:
  version: "8.0.31-innodb"
  topology:
    mode: InnoDBCluster
    innoDBCluster:
      router:
        replicas: 1
  replicas: 3
  configSecret:
    name: my-configuration
  storageType: Durable
  storage:
    storageClassName: "standard"
    accessModes:
      - ReadWriteOnce
    resources:
      requests:
        storage: 1Gi
  terminationPolicy: WipeOut

Let’s create the MySQL CR we have shown above,

$ kubectl create -f https://github.com/kubedb/docs/raw/v2023.02.28/docs/guides/mysql/reconfigure/reconfigure-steps/yamls/innob-cluster.yaml
mysql.kubedb.com/sample-mysql created
apiVersion: kubedb.com/v1alpha2
kind: MySQL
metadata:
  name: sample-mysql
  namespace: demo
spec:
  version: "8.0.31"
  topology:
    mode: SemiSync
    semiSync:
      sourceWaitForReplicaCount: 1
      sourceTimeout: 23h
      errantTransactionRecoveryPolicy: PseudoTransaction
  replicas: 3
  configSecret:
    name: my-configuration
  storageType: Durable
  storage:
    storageClassName: "standard"
    accessModes:
      - ReadWriteOnce
    resources:
      requests:
        storage: 1Gi
  terminationPolicy: WipeOut

Let’s create the MySQL CR we have shown above,

$ kubectl create -f https://github.com/kubedb/docs/raw/v2023.02.28/docs/guides/mysql/reconfigure/reconfigure-steps/yamls/semi-sync.yaml
mysql.kubedb.com/sample-mysql created
apiVersion: kubedb.com/v1alpha2
kind: MySQL
metadata:
  name: sample-mysql
  namespace: demo
spec:
  version: "8.0.31"
  configSecret:
    name: my-configuration
  storageType: Durable
  storage:
    storageClassName: "standard"
    accessModes:
      - ReadWriteOnce
    resources:
      requests:
        storage: 1Gi
  terminationPolicy: WipeOut

Let’s create the MySQL CR we have shown above,

$ kubectl create -f https://github.com/kubedb/docs/raw/v2023.02.28/docs/guides/mysql/reconfigure/reconfigure-steps/yamls/stand-alone.yaml
mysql.kubedb.com/sample-mysql created

Now, wait until sample-mysql has status Ready. i.e,

$ kubectl get mysql -n demo
NAME           VERSION   STATUS   AGE
sample-mysql   8.0.31    Ready    5m49s

Now, we will check if the database has started with the custom configuration we have provided.

First we need to get the username and password to connect to a mysql instance,

$ kubectl get secrets -n demo sample-mysql-auth -o jsonpath='{.data.\username}' | base64 -d                                                                       
root

$ kubectl get secrets -n demo sample-mysql-auth -o jsonpath='{.data.\password}' | base64 -d                                                                         
86TwLJ!2Kpq*vv1y

Now, we will check if the database has started with the custom configuration we have provided.

$ kubectl exec -it -n demo sample-mysql-0 -- bash
mysql -uroot -p$MYSQL_ROOT_PASSWORD
mysql: [Warning] Using a password on the command line interface can be insecure.
Welcome to the MySQL monitor.  Commands end with ; or \g.
Your MySQL connection id is 112
Server version: 8.0.31 MySQL Community Server - GPL

Copyright (c) 2000, 2022, Oracle and/or its affiliates.

Oracle is a registered trademark of Oracle Corporation and/or its
affiliates. Other names may be trademarks of their respective
owners.

Type 'help;' or '\h' for help. Type '\c' to clear the current input statement.

mysql> show variables like 'max_connections';
+-----------------+-------+
| Variable_name   | Value |
+-----------------+-------+
| max_connections | 200   |
+-----------------+-------+
1 row in set (0.00 sec)

mysql> show variables like 'read_buffer_size';
+------------------+---------+
| Variable_name    | Value   |
+------------------+---------+
| read_buffer_size | 1048576 |
+------------------+---------+
1 row in set (0.00 sec)

mysql> 

As we can see from the configuration of ready mysql, the value of max_connections has been set to 200 and read_buffer_size has been set to 1048576.

Reconfigure using new config secret

Now we will reconfigure this database to set max_connections to 250 and read_buffer_size to 122880.

Now, we will create new file new-my-config.cnf containing required configuration settings.

$ cat new-my-config.cnf 
[mysqld]
max_connections = 250
read_buffer_size = 122880

Then, we will create a new secret with this configuration file.

$ kubectl create secret generic -n demo new-my-configuration --from-file=./new-my-config.cnf
secret/new-my-configuration created

Create MySQLOpsRequest

Now, we will use this secret to replace the previous secret using a MySQLOpsRequest CR. The MySQLOpsRequest yaml is given below,

apiVersion: ops.kubedb.com/v1alpha1
kind: MySQLOpsRequest
metadata:
  name: myops-reconfigure-config
  namespace: demo
spec:
  type: Reconfigure
  databaseRef:
    name: sample-mysql
  configuration:   
    configSecret:
      name: new-my-configuration

Here,

  • spec.databaseRef.name specifies that we are reconfiguring sample-mysql database.
  • spec.type specifies that we are performing Reconfigure on our database.
  • spec.configuration.configSecret.name specifies the name of the new secret.

Let’s create the MySQLOpsRequest CR we have shown above,

$ kubectl apply -f https://github.com/kubedb/docs/raw/v2023.02.28/docs/guides/mysql/reconfigure/reconfigure-steps/yamls/reconfigure-using-secret.yaml
mysqlopsrequest.ops.kubedb.com/myops-reconfigure-config created

Verify the new configuration is working

If everything goes well, KubeDB Enterprise operator will update the configSecret of MySQL object.

Let’s wait for MySQLOpsRequest to be Successful. Run the following command to watch MySQLOpsRequest CR,

$ kubectl get mysqlopsrequest --all-namespaces
NAMESPACE   NAME                       TYPE          STATUS       AGE
demo        myops-reconfigure-config   Reconfigure   Successful   3m8s

We can see from the above output that the MySQLOpsRequest has succeeded. If we describe the MySQLOpsRequest we will get an overview of the steps that were followed to reconfigure the database.

$ kubectl describe mysqlopsrequest -n demo myops-reconfigure-config
Name:         myops-reconfigure-config
Namespace:    demo
Labels:       <none>
Annotations:  <none>
API Version:  ops.kubedb.com/v1alpha1
Kind:         MySQLOpsRequest
Metadata:
  Creation Timestamp:  2022-11-23T09:09:20Z
  Generation:          1
  Managed Fields:
    API Version:  ops.kubedb.com/v1alpha1
    Fields Type:  FieldsV1
    fieldsV1:
      f:metadata:
        f:annotations:
          .:
          f:kubectl.kubernetes.io/last-applied-configuration:
      f:spec:
        .:
        f:apply:
        f:configuration:
          .:
          f:configSecret:
        f:databaseRef:
        f:type:
    Manager:      kubectl-client-side-apply
    Operation:    Update
    Time:         2022-11-23T09:09:20Z
    API Version:  ops.kubedb.com/v1alpha1
    Fields Type:  FieldsV1
    fieldsV1:
      f:status:
        .:
        f:conditions:
        f:observedGeneration:
        f:phase:
    Manager:         kubedb-ops-manager
    Operation:       Update
    Subresource:     status
    Time:            2022-11-23T09:09:20Z
  Resource Version:  786443
  UID:               253ff2e3-0647-4926-bfb9-ef44b3b8a31d
Spec:
  Apply:  IfReady
  Configuration:
    Config Secret:
      Name:  new-my-configuration
  Database Ref:
    Name:  sample-mysql
  Type:    Reconfigure
Status:
  Conditions:
    Last Transition Time:  2022-11-23T09:09:20Z
    Message:               Controller has started to Progress the MySQLOpsRequest: demo/myops-reconfigure-config
    Observed Generation:   1
    Reason:                OpsRequestProgressingStarted
    Status:                True
    Type:                  Progressing
    Last Transition Time:  2022-11-23T09:13:10Z
    Message:               Successfully reconfigured MySQL pod for MySQLOpsRequest: demo/myops-reconfigure-config 
    Observed Generation:   1
    Reason:                SuccessfullyDBReconfigured
    Status:                True
    Type:                  Reconfigure
    Last Transition Time:  2022-11-23T09:13:10Z
    Message:               Controller has successfully reconfigure the MySQL demo/myops-reconfigure-config
    Observed Generation:   1
    Reason:                OpsRequestProcessedSuccessfully
    Status:                True
    Type:                  Successful
  Observed Generation:     1
  Phase:                   Successful
Events:
  Type    Reason      Age   From                        Message
  ----    ------      ----  ----                        -------
  Normal  Starting    30m   KubeDB Enterprise Operator  Start processing for MySQLOpsRequest: demo/myops-reconfigure-config
  Normal  Starting    30m   KubeDB Enterprise Operator  Pausing MySQL databse: demo/sample-mysql
  Normal  Successful  30m   KubeDB Enterprise Operator  Successfully paused MySQL database: demo/sample-mysql for MySQLOpsRequest: myops-reconfigure-config
  Normal  Starting    30m   KubeDB Enterprise Operator  Restarting Pod: sample-mysql-1/demo
  Normal  Starting    29m   KubeDB Enterprise Operator  Restarting Pod: sample-mysql-2/demo
  Normal  Starting    28m   KubeDB Enterprise Operator  Restarting Pod: sample-mysql-0/demo
  Normal  Successful  27m   KubeDB Enterprise Operator  Successfully reconfigured MySQL pod for MySQLOpsRequest: demo/myops-reconfigure-config
  Normal  Starting    27m   KubeDB Enterprise Operator  Reconfiguring MySQL
  Normal  Successful  27m   KubeDB Enterprise Operator  Successfully reconfigure the MySQL object
  Normal  Starting    27m   KubeDB Enterprise Operator  Resuming MySQL database: demo/sample-mysql
  Normal  Successful  27m   KubeDB Enterprise Operator  Successfully resumed MySQL database: demo/sample-mysql
  Normal  Successful  27m   KubeDB Enterprise Operator  Controller has Successfully reconfigure the of MySQL: demo/sample-mysql

Now let’s connect to a mysql instance and run a mysql internal command to check the new configuration we have provided.

$ kubectl exec -it -n demo sample-mysql-0 -- bash

bash-4.4# mysql -u${MYSQL_ROOT_USERNAME} -p${MYSQL_ROOT_PASSWORD}

mysql: [Warning] Using a password on the command line interface can be insecure.
Welcome to the MySQL monitor.  Commands end with ; or \g.
Your MySQL connection id is 279
Server version: 8.0.31 MySQL Community Server - GPL

Copyright (c) 2000, 2022, Oracle and/or its affiliates.

Oracle is a registered trademark of Oracle Corporation and/or its
affiliates. Other names may be trademarks of their respective
owners.

Type 'help;' or '\h' for help. Type '\c' to clear the current input statement.

mysql> 
mysql> 
mysql> show variables like 'max_connections';
+-----------------+-------+
| Variable_name   | Value |
+-----------------+-------+
| max_connections | 250   |
+-----------------+-------+
1 row in set (0.00 sec)

mysql> show variables like 'read_buffer_size';
+------------------+--------+
| Variable_name    | Value  |
+------------------+--------+
| read_buffer_size | 122880 |
+------------------+--------+
1 row in set (0.00 sec)

mysql> 

As we can see from the configuration has changed, the value of max_connections has been changed from 200 to 250 and and the read_buffer_size has been changed 1048576 to 122880. So the reconfiguration of the database is successful.

Remove Custom Configuration

We can also remove exisiting custom config using MySQLOpsRequest. Provide true to field spec.configuration.removeCustomConfig and make an Ops Request to remove existing custom configuration.

Create MySQLOpsRequest

Lets create an MySQLOpsRequest having spec.configuration.removeCustomConfig is equal true,

apiVersion: ops.kubedb.com/v1alpha1
kind: MySQLOpsRequest
metadata:
  name: myops-reconfigure-remove
  namespace: demo
spec:
  type: Reconfigure
  databaseRef:
    name: sample-mysql
  configuration:   
    removeCustomConfig: true

Here,

  • spec.databaseRef.name specifies that we are reconfiguring myops-reconfigure-remove database.
  • spec.type specifies that we are performing Reconfigure on our database.
  • spec.configuration.removeCustomConfig is a bool field that should be true when you want to remove existing custom configuration.

Let’s create the MySQLOpsRequest CR we have shown above,

$ kubectl apply -f https://github.com/kubedb/docs/raw/v2023.02.28/docs/guides/mysql/reconfigure/yamls/reconfigure-steps/reconfigure-remove.yaml
mysqlopsrequest.ops.kubedb.com/mdops-reconfigure-remove created

Verify the new configuration is working

If everything goes well, KubeDB Enterprise operator will update the configSecret of MySQL object.

Let’s wait for MySQLOpsRequest to be Successful. Run the following command to watch MariaDBOpsRequest CR,

$ kubectl get mysqlopsrequest --all-namespaces
NAMESPACE   NAME                       TYPE          STATUS       AGE
demo        mdops-reconfigure-remove   Reconfigure   Successful   2m1s

Now let’s connect to a mysql instance and run a mysql internal command to check the new configuration we have provided.

$ kubectl exec -it -n demo sample-mysql-0 -- bash
bash-4.4# mysql -u${MYSQL_ROOT_USERNAME} -p${MYSQL_ROOT_PASSWORD}
mysql: [Warning] Using a password on the command line interface can be insecure.
Welcome to the MySQL monitor.  Commands end with ; or \g.
Your MySQL connection id is 279
Server version: 8.0.31 MySQL Community Server - GPL

Copyright (c) 2000, 2022, Oracle and/or its affiliates.

Oracle is a registered trademark of Oracle Corporation and/or its
affiliates. Other names may be trademarks of their respective
owners.

Type 'help;' or '\h' for help. Type '\c' to clear the current input statement.

mysql> 
mysql> 
mysql> show variables like 'max_connections';
+-----------------+-------+
| Variable_name   | Value |
+-----------------+-------+
| max_connections | 151   |
+-----------------+-------+
1 row in set (0.00 sec)

mysql> show variables like 'read_buffer_size';
+------------------+--------+
| Variable_name    | Value  |
+------------------+--------+
| read_buffer_size | 131072 |
+------------------+--------+
1 row in set (0.00 sec)

mysql> 

As we can see from the configuration has changed to its default value. So removal of existing custom configuration using MySQLOpsRequest is successful.

Cleaning Up

To clean up the Kubernetes resources created by this tutorial, run:

$ kubectl delete mysql -n demo sample-mysql
$ kubectl delete mysqlopsrequest -n demo myops-reconfigure-config  mdops-reconfigure-remove
$ kubectl delete ns demo